PacMAN decision support system

Potential detection of Loimia medusa in Fiji

Description:

Potential detection of Loimia medusa with confidence medium on 2022-02-01 in material sample S42, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Loimia medusa
Annelida > Polychaeta > Terebellida > Terebellidae
WoRMS: 131499

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

322.0

Names:

Occurrences:

view occurrences

id	d92c7769-ab50-45a7-8ee6-24c852a90d79
scientificName	Loimia medusa
AphiaID	131499
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S42
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	322.0

id	0cccba79-e255-46a4-9b7c-328414651aa5
scientificName	Loimia medusa
AphiaID	131499
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S13
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	27.0

id	595a5948-0576-45b9-8db2-88a359730d3a
scientificName	Loimia medusa
AphiaID	131499
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S15
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	9.0

id	d3486601-38a8-4e6a-b659-1c2e9507d163
scientificName	Loimia medusa
AphiaID	131499
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S18
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	9.0

id	3d8ae1fb-fff1-4881-9f9e-87526e13038f
scientificName	Loimia medusa
AphiaID	131499
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S14
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	7.0

id	c091f248-1e44-4109-94be-76a36ab98aea
scientificName	Loimia medusa
AphiaID	131499
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S2
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	0e30cbab-7a5d-4f32-8a76-fa44e5b30421
scientificName	Loimia medusa
AphiaID	131499
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	5.0

Loimia medusa in Fiji

Status

Loimia medusa does not have an offial status in Fiji.

Notes

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