| Occurrences: |
view occurrences
| id |
b56cb44c-4ee2-44fa-bee6-cf89345706cf
|
| scientificName |
Barnea candida
|
| AphiaID |
140767
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-26
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGCCTCGCGGCGGTCACTGCTCGTCCTCGCCTCCTACGGCCGGTACACACACCGTCCCTTGGTGCTCTTGACCGAGTGTCTCGGGCGGCCGGCACGTTTACTTTGAAGAAATTGGAGTGCT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Barnea truncata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156750",
"accession": "JF899206.1.1783_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "AM774541.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea parva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140768",
"accession": "AM774542.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "KC429405.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
0d1fb525-9687-4ace-a4e0-9bc97a0677d9
|
| scientificName |
Barnea candida
|
| AphiaID |
140767
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-27
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGCCTCGCGGCGGTCACTGCTCGTCCTCGCCTCCTACGGCCGGTACACACACCGTCCCTTGGTGCTCTTGACCGAGTGTCTCGGGCGGCCGGCACGTTTACTTTGAAGAAATTGGAGTGCT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Barnea truncata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156750",
"accession": "JF899206.1.1783_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "AM774541.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea parva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140768",
"accession": "AM774542.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "KC429405.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|