PacMAN decision support system

Potential detection of Saccostrea cuccullata in Fiji

Description:

Potential detection of Saccostrea cuccullata with confidence low on 2024-02-28 in material sample USP-24-01-207, marker COI

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Saccostrea cuccullata
Mollusca > Bivalvia > Ostreida > Ostreidae
WoRMS: 181316

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

53.0

Names:

Occurrences:

view occurrences

id	933cbef8-afb6-4745-a15e-c3efacf420a5
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20240228_WC
materialSampleID	USP-24-01-207
target_gene	COI
DNA_sequence	ATTATCTACTTTTTCGTATCATGGGATGTGTATGGATCTGGCTATTTTGAGACTTCATTTAGCCGGTATTAGGTCAATTTTTAGTTCGATTAATTTTATAGTGACTATTAAAAATATGCGTTCTGTAGATGGCCACTTGTTAAGGCTATTTCCGTGATCAATTAAGGTAACTTCTTTTTTGCTGCTGACAACTTTGCCTGTATTAGCCGGAGGTCTTACTATGCTTTTAACAGACCGACACTTTAACACCTCATTTTTCGACCCTGTAGGTGGGGGGGATCCAATTTTATTCCAGCATTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 0.87 } ] }
organismQuantity	53.0

id	ad254a03-595d-43f0-b16b-2ed153b872c4
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20240228_WA
materialSampleID	USP-24-01-205
target_gene	COI
DNA_sequence	ATTATCTACTTTTTCGTATCATGGGATGTGTATGGATCTGGCTATTTTGAGACTTCATTTAGCCGGTATTAGGTCAATTTTTAGTTCGATTAATTTTATAGTGACTATTAAAAATATGCGTTCTGTAGATGGCCACTTGTTAAGGCTATTTCCGTGATCAATTAAGGTAACTTCTTTTTTGCTGCTGACAACTTTGCCTGTATTAGCCGGAGGTCTTACTATGCTTTTAACAGACCGACACTTTAACACCTCATTTTTCGACCCTGTAGGTGGGGGGGATCCAATTTTATTCCAGCATTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 0.87 } ] }
organismQuantity	20.0

id	98f4e28e-119d-444d-b7ca-f7b8c283a0bc
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20240228_WA
materialSampleID	USP-24-01-205
target_gene	COI
DNA_sequence	GTTATCTACTTTCTCTTACCATGGTATGTGTATAGATTTAGCCATTTTGAGACTTCACTTGGCTGGTATTAGCTCAATTTTTAGTTCAATTAACTTTATGGTGACTATTAAAAATATGCGTTCTGTGGACGGGCACCTATTAAGTCTATTTCCGTGATCAATTAAAGTAACTTCTTTTTTACTACTTACGACCCTTCCTGTATTAGCCGGGGGTCTTACTATGCTTCTGACAGATCGACACTTTAACACCTCATTTTTCGACCCTGTGGGTGGCGGAGATCCGGTTTTATTCCAGCACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 1 } ] }
organismQuantity	10.0

id	bbac6e92-351a-42e7-9ade-88c76024f660
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_WB
materialSampleID	USP-24-01-209
target_gene	COI
DNA_sequence	ATTATCTACTTTTTCGTATCATGGGATGTGTATGGATCTGGCTATTTTGAGACTTCATTTAGCCGGTATTAGGTCAATTTTTAGTTCGATTAATTTTATAGTGACTATTAAAAATATGCGTTCTGTAGATGGCCACTTGTTAAGGCTATTTCCGTGATCAATTAAGGTAACTTCTTTTTTGCTGCTGACAACTTTGCCTGTATTAGCCGGAGGTCTTACTATGCTTTTAACAGACCGACACTTTAACACCTCATTTTTCGACCCTGTAGGTGGGGGGGATCCAATTTTATTCCAGCATTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 0.87 } ] }
organismQuantity	8.0

id	7ece187a-5aa0-4939-80f5-76c4d4be64f5
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_WA
materialSampleID	USP-24-01-208
target_gene	COI
DNA_sequence	ATTATCTACTTTTTCGTATCATGGGATGTGTATGGATCTGGCTATTTTGAGACTTCATTTAGCCGGTATTAGGTCAATTTTTAGTTCGATTAATTTTATAGTGACTATTAAAAATATGCGTTCTGTAGATGGCCACTTGTTAAGGCTATTTCCGTGATCAATTAAGGTAACTTCTTTTTTGCTGCTGACAACTTTGCCTGTATTAGCCGGAGGTCTTACTATGCTTTTAACAGACCGACACTTTAACACCTCATTTTTCGACCCTGTAGGTGGGGGGGATCCAATTTTATTCCAGCATTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 0.87 } ] }
organismQuantity	4.0

id	0de077ee-fb6d-46d4-a2b5-3aa93550fe8c
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_WC
materialSampleID	USP-24-01-210
target_gene	COI
DNA_sequence	ATTATCTACTTTTTCGTATCATGGGATGTGTATGGATCTGGCTATTTTGAGACTTCATTTAGCCGGTATTAGGTCAATTTTTAGTTCGATTAATTTTATAGTGACTATTAAAAATATGCGTTCTGTAGATGGCCACTTGTTAAGGCTATTTCCGTGATCAATTAAGGTAACTTCTTTTTTGCTGCTGACAACTTTGCCTGTATTAGCCGGAGGTCTTACTATGCTTTTAACAGACCGACACTTTAACACCTCATTTTTCGACCCTGTAGGTGGGGGGGATCCAATTTTATTCCAGCATTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 0.87 } ] }
organismQuantity	3.0

id	f16d6cbb-b816-4bf2-a82d-cc55193cb7c1
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20240228_WB
materialSampleID	USP-24-01-206
target_gene	COI
DNA_sequence	ATTATCTACTTTTTCGTATCATGGGATGTGTATGGATCTGGCTATTTTGAGACTTCATTTAGCCGGTATTAGGTCAATTTTTAGTTCGATTAATTTTATAGTGACTATTAAAAATATGCGTTCTGTAGATGGCCACTTGTTAAGGCTATTTCCGTGATCAATTAAGGTAACTTCTTTTTTGCTGCTGACAACTTTGCCTGTATTAGCCGGAGGTCTTACTATGCTTTTAACAGACCGACACTTTAACACCTCATTTTTCGACCCTGTAGGTGGGGGGGATCCAATTTTATTCCAGCATTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 0.87 } ] }
organismQuantity	3.0

id	8c3ca083-01d9-45c3-b804-f1572981ba9b
scientificName	Saccostrea cuccullata
AphiaID	181316
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_S2C
materialSampleID	USP-24-01-214
target_gene	COI
DNA_sequence	ATTATCTACTTTTTCGTATCATGGGATGTGTATGGATCTGGCTATTTTGAGACTTCATTTAGCCGGTATTAGGTCAATTTTTAGTTCGATTAATTTTATAGTGACTATTAAAAATATGCGTTCTGTAGATGGCCACTTGTTAAGGCTATTTCCGTGATCAATTAAGGTAACTTCTTTTTTGCTGCTGACAACTTTGCCTGTATTAGCCGGAGGTCTTACTATGCTTTTAACAGACCGACACTTTAACACCTCATTTTTCGACCCTGTAGGTGGGGGGGATCCAATTTTATTCCAGCATTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Saccostrea cucullata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:224654", "confidence": 0.87 } ] }
organismQuantity	1.0

Saccostrea cuccullata in Fiji

Status

Saccostrea cuccullata does not have an offial status in Fiji.

Notes

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