| Occurrences: |
view occurrences
| id |
0defff6a-007f-45a2-9ddf-3bf7c7111a3f
|
| scientificName |
Subeucalanus pileatus
|
| AphiaID |
104547
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-89
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "GU969188.1.1794_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "AY192563.1.1612_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"accession": "GU969168.1.1739_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus spinifer",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346437",
"accession": "AY335856.1.1041_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus inermis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346435",
"accession": "AY335857.1.1683_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
1cdfdf18-de35-4dd5-a8a9-1486b1a7fa73
|
| scientificName |
Subeucalanus pileatus
|
| AphiaID |
104547
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-88
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "GU969188.1.1794_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "AY192563.1.1612_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"accession": "GU969168.1.1739_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus spinifer",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346437",
"accession": "AY335856.1.1041_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus inermis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346435",
"accession": "AY335857.1.1683_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
6b1ec230-1e3d-46c7-ba59-606c1d70f843
|
| scientificName |
Subeucalanus pileatus
|
| AphiaID |
104547
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-90
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "GU969188.1.1794_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "AY192563.1.1612_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"accession": "GU969168.1.1739_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus spinifer",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346437",
"accession": "AY335856.1.1041_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus inermis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346435",
"accession": "AY335857.1.1683_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|