PacMAN decision support system

Potential detection of Lyrodus pedicellatus in Fiji

Description:

Potential detection of Lyrodus pedicellatus with confidence low on 2022-02-01 in material sample S42, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Lyrodus pedicellatus
Mollusca > Bivalvia > Myida > Teredinidae
WoRMS: 141600

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

25.0

Names:

6

Occurrences:

view occurrences

id	353e9f22-8e1b-47ab-b721-5d2dacfd09a9
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S42
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	25.0

id	f63a3bc2-3320-477b-aa24-89a6a40e4237
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S18
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	23.0

id	debf25f7-b910-4afc-8b14-5a42ee6fc0a1
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S7
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	13.0

id	f3d32000-eac0-4a85-a7d8-897c5e476658
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	11.0

id	1b3c7605-05b0-4843-9b5e-689398a91d24
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S15
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	7.0

id	0e0a6b05-46cf-482b-8e9c-b2befeb6a7a8
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S13
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	4.0

id	281b0875-6790-42a8-a844-2c2ed8a4498d
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S19
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	c2002a63-d356-4ad6-80d8-19e758022872
scientificName	Xylophaga
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S11
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Lyrodus pedicellatus in Fiji

Status

Lyrodus pedicellatus does not have an offial status in Fiji.

Notes

No notes found.