Occurrences: |
view occurrences
id |
353e9f22-8e1b-47ab-b721-5d2dacfd09a9
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S42
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
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"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
25.0
|
id |
f63a3bc2-3320-477b-aa24-89a6a40e4237
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S18
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
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"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
23.0
|
id |
debf25f7-b910-4afc-8b14-5a42ee6fc0a1
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S7
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
13.0
|
id |
f3d32000-eac0-4a85-a7d8-897c5e476658
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S16
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
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}
]
}
|
organismQuantity |
11.0
|
id |
1b3c7605-05b0-4843-9b5e-689398a91d24
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S15
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
7.0
|
id |
0e0a6b05-46cf-482b-8e9c-b2befeb6a7a8
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S13
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
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"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
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},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
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"accession": "JF899212.1.1758_U",
"identity": 1,
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}
]
}
|
organismQuantity |
4.0
|
id |
281b0875-6790-42a8-a844-2c2ed8a4498d
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S19
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
c2002a63-d356-4ad6-80d8-19e758022872
|
scientificName |
Xylophaga
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S11
|
target_gene |
18S
|
DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
|