| Occurrences: |
view occurrences
| id |
b21d743f-3573-43b7-9b37-8ffd7ba1099e
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-77
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
142.0
|
| id |
48ed6eac-b9d6-4c78-a271-63c4de6edf55
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-78
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
83.0
|
| id |
cfc806de-7cf5-4854-ae5b-2b3677e45249
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-75
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
78.0
|
| id |
0e83e3e5-59e4-45a7-9e23-c62a33ea6c9e
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-76
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
75.0
|
| id |
4fd86b45-1dc6-402d-aedd-8532e701f3f7
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-73
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
20.0
|
| id |
95dd057d-90a5-468f-a61e-b97257ffc374
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-74
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
|