PacMAN decision support system

Potential detection of Ruditapes philippinarum in Fiji

Description:

Potential detection of Ruditapes philippinarum with confidence low on 2023-08-15 in material sample USP-24-01-37, marker 18S

Confidence:

low

Risk:

high priority view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ruditapes philippinarum
Mollusca > Bivalvia > Venerida > Veneridae
WoRMS: 231750 CABI: 61697

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

9.0

Names:

Priority lists:

Top 25 Marine non-indigenous species for the Pacific region

Occurrences:

view occurrences

id	103d4401-7e52-4720-9ea8-68a11f69926c
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-37
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	9.0

id	c109ba23-d243-4a68-bc1b-32af3cfaeb92
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-37
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	30824f3c-ebe7-4071-916b-24eac3fcb9ae
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-36
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	7c31b033-984f-4290-8fa4-86e148f58eba
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-38
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	9a3682bf-35d5-4e3f-9335-2fb758038cc4
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-36
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Ruditapes philippinarum in Fiji

Status

Ruditapes philippinarum does not have an offial status in Fiji.

Notes

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