| Occurrences: |
view occurrences
| id |
b1a4e5a2-daab-404d-aa0b-4e417a4db636
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S11
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
13.0
|
| id |
1046a234-434b-4879-bf97-ade3d38c56d9
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S18
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
5.0
|
| id |
9594b601-12b2-4c1b-918d-4b1749f5ab61
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S19
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|