| Occurrences: |
view occurrences
| id |
4b2a50d0-11cb-4c1a-ba69-1cbd3729b600
|
| scientificName |
Sertularella
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
21.0
|
| id |
fc7db93a-3af7-4d3b-8dda-4d3fd3212640
|
| scientificName |
Sertularella
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S50
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
11.0
|
| id |
109740e4-be85-4d26-b274-a7c990e4493a
|
| scientificName |
Sertularella
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
9.0
|
| id |
171044cd-74dc-48a6-ba75-92de1ea43821
|
| scientificName |
Sertularella
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
|