PacMAN decision support system

Potential detection of Paramphiascella fulvofasciata in Fiji

Description:

Potential detection of Paramphiascella fulvofasciata with confidence medium on 2023-04-27 in material sample USP-24-01-04, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Paramphiascella fulvofasciata
Arthropoda > Copepoda > Harpacticoida > Miraciidae
WoRMS: 115960

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

22.0

Names:

2

Occurrences:

view occurrences

id	a2d044b5-c61e-4ad5-a7c9-14749283a3f4
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-04
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	22.0

id	b76dc400-da96-4ee2-9fd4-c3c004467f2b
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-05
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	15420771-95b8-4643-a761-c4f3ab895274
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-08
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	c226a18d-a7e5-437e-8052-54b54dfa0035
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-04
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.981, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	92d19fb7-0037-4da0-bb2c-e091259db705
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-01
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.981, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	709c7c36-4e6d-4e7a-8cf4-685250531291
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-05
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.9 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	89309769-10c8-40ac-90f4-cdd7ab7e86b0
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-01
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.9 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	c82092c7-773e-4acf-b4b0-bfa8d22cf028
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-01
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.986, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	d00d783e-b92c-418f-9969-cb3f1255c10b
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-05
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.986, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	10ddab3a-5f80-405c-b2f8-791b032ad23f
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-16
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.986, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Paramphiascella fulvofasciata in Fiji

Status

Paramphiascella fulvofasciata does not have an offial status in Fiji.

Notes

No notes found.