Occurrences: |
view occurrences
id |
641a84a2-1c79-47fe-af88-8c6e29d6c086
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S20
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACTGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTGCGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_diaphana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117632",
"accession": "FJ550525.1.1721_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Plumularia_obliqua",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117823",
"accession": "FJ550544.1.1688_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
133.0
|
id |
fd66f018-6ff6-4668-a4b5-4dd301ad5528
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S19
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACTGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTGCGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_diaphana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117632",
"accession": "FJ550525.1.1721_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Plumularia_obliqua",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117823",
"accession": "FJ550544.1.1688_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
13.0
|
id |
61a21a1b-961c-40c6-9dcc-6f25922fc421
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S42
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACTGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTGCGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_diaphana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117632",
"accession": "FJ550525.1.1721_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Plumularia_obliqua",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117823",
"accession": "FJ550544.1.1688_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
ab8eea53-0b71-4c3e-b5e7-c8e1c9ff9608
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S15
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACTGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTGCGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_diaphana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117632",
"accession": "FJ550525.1.1721_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Plumularia_obliqua",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117823",
"accession": "FJ550544.1.1688_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.975,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
7d0e4565-c030-4580-9f82-b120df438720
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S20
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCATTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGTGCGGGCCAGTTGGTCGGCCGCAAGGCTCGCTACTGACTGGTCTGCTCTTCTTCTCAAAGGCCGCTCGTGCTCTTCACTGAGTGCGGGTACCCTGGCATTTGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
139.0
|
id |
d4a8d788-bfd2-46e7-bc65-f810a0a73132
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S19
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCATTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGTGCGGGCCAGTTGGTCGGCCGCAAGGCTCGCTACTGACTGGTCTGCTCTTCTTCTCAAAGGCCGCTCGTGCTCTTCACTGAGTGCGGGTACCCTGGCATTTGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
17.0
|
id |
ed279b0c-79a0-4302-b39b-8b0e22541090
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S15
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCATTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGTGCGGGCCAGTTGGTCGGCCGCAAGGCTCGCTACTGACTGGTCTGCTCTTCTTCTCAAAGGCCGCTCGTGCTCTTCACTGAGTGCGGGTACCCTGGCATTTGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
2.0
|
id |
1135cfe0-1c1b-4c92-b249-9d8739e8a892
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S1
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCATTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGTGCGGGCCAGTTGGTCGGCCGCAAGGCTCGCTACTGACTGGTCTGCTCTTCTTCTCAAAGGCCGCTCGTGCTCTTCACTGAGTGCGGGTACCCTGGCATTTGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
37268933-7c80-46a9-bcee-e04ebeb21d3e
|
scientificName |
Kirchenpaueria halecioides
|
AphiaID |
117673
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S42
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCATTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGTGCGGGCCAGTTGGTCGGCCGCAAGGCTCGCTACTGACTGGTCTGCTCTTCTTCTCAAAGGCCGCTCGTGCTCTTCACTGAGTGCGGGTACCCTGGCATTTGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Kirchenpaueria halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Kirchenpaueria_halecioides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117673",
"accession": "FJ550530.1.1712_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|