| Occurrences: |
view occurrences
| id |
8c7ccd46-a9d7-425d-8774-ca32014e6c93
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
113c6a03-6fcf-41cf-ac10-4f88e1cb8aed
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
|