| Occurrences: |
view occurrences
| id |
b9074d15-690f-4575-bb36-2bdef58e1d58
|
| scientificName |
Sertularella
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S19
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
11.0
|
| id |
38ecca75-7027-438f-be38-62284f17617d
|
| scientificName |
Sertularella
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S17
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
11898ce8-4152-4813-b36c-1bfa9401bc57
|
| scientificName |
Sertularella
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S20
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
4226b816-abb1-41bc-ae7e-7abbd77b8da8
|
| scientificName |
Sertularella
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S11
|
| target_gene |
18S
|
| DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATCCGCGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Sertularella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117233",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_gayi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117902",
"accession": "FJ550579.1.1703_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117903",
"accession": "FJ550546.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sertularella_sanmatiasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:285556",
"accession": "MH392744.1.644_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|