PacMAN decision support system

Potential detection of Ruditapes philippinarum in Fiji

Description:

Potential detection of Ruditapes philippinarum with confidence low on 2022-02-01 in material sample S18, marker 18S

Confidence:

low

Risk:

high priority view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ruditapes philippinarum
Mollusca > Bivalvia > Venerida > Veneridae
WoRMS: 231750 CABI: 61697

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

83.0

Names:

4

Priority lists:

Top 25 Marine non-indigenous species for the Pacific region

Occurrences:

view occurrences

id	5014294f-79f3-44f5-867e-2a00685ee355
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S18
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	83.0

id	e9ec973e-edfa-4d76-81e0-3baf350331a8
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S19
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	35.0

id	a90d4018-5459-4bb4-89a9-792ba3764cfb
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S20
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	10.0

id	14b55b8b-e655-49fd-b5ac-e6d9851bdbeb
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S42
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	7.0

id	227ed599-60c9-44be-a613-431c88098444
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S7
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	4a905811-310c-4adc-ba80-d8591ca880e7
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S7
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	6.0

id	e18c68b1-5642-45b5-997a-271e33c5614a
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S42
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	4.0

id	1263093f-f68b-4113-9a16-6e85caf441f5
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S13
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	37b9c0e3-da7e-47a3-8e6b-940a525a247f
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S1
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	3ecd9304-1ffe-4b9e-9536-c89e5c44e2ef
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S2
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	516c22d5-c737-45de-a34d-aef2631637cc
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S2
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	81b643d0-a179-4432-879a-5a2ba2181f2e
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	76c71779-339b-45e6-8827-b7607b7c53fb
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S11
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	7e2005eb-d632-4eb2-97c4-ff714cf516c3
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S39
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	aa34c7bc-d659-4a47-8a83-486dc3b89c81
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S14
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	fcb47e4f-c8df-47c2-9408-89fbb1c54413
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S17
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Ruditapes philippinarum in Fiji

Status

Ruditapes philippinarum does not have an offial status in Fiji.

Notes

No notes found.