PacMAN decision support system

Potential detection of Ciona savignyi in Fiji

Description:

Potential detection of Ciona savignyi with confidence medium on 2023-08-24 in material sample USP-24-01-65, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ciona savignyi
Chordata > Ascidiacea > Phlebobranchia > Cionidae
WoRMS: 250292

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

593.0

Names:

1

Occurrences:

view occurrences

id	12947212-7aeb-42fc-88e0-d4939402a8e9
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-65
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	593.0

id	2f81b306-d503-47af-948f-28a2e4319c71
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-64
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	48.0

id	f7e06ab3-5e1b-4583-a4c7-4ef268955cfd
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	10.0

id	68121e04-4aab-4a83-ba7b-aba01f590103
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	7.0

id	941787f7-8fe2-4b91-923d-1a54adbc0c35
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-43
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	4.0

id	96a624ec-3f17-4e7c-a658-d00281a31c38
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-34
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	4c7e062f-abe9-4885-a38a-e7a694706ee7
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-31
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	64b0423a-74e9-4692-bac6-f980ce2f9525
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-32
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Ciona savignyi in Fiji

Status

Ciona savignyi does not have an offial status in Fiji.

Notes

No notes found.