Occurrences: |
view occurrences
id |
83b41730-1750-4651-8078-d28ce232dc90
|
scientificName |
Pennaria disticha
|
AphiaID |
117802
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-202
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGGCCAGTTGGTCCGCCGCAAGGTGTGTTACCGACTGGTCTGTTCTTCTTCGCAAAGACTGCTCATGCACTTTATTGTGTGTGTGTAGGATTTACGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pennaria disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "GQ424342.1.1801_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "EU883545.1.1796_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "AY920762.1.1776_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962290.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962291.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1359.0
|
id |
31df9c23-2e58-4288-8f89-9688214645af
|
scientificName |
Pennaria disticha
|
AphiaID |
117802
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-201
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGGCCAGTTGGTCCGCCGCAAGGTGTGTTACCGACTGGTCTGTTCTTCTTCGCAAAGACTGCTCATGCACTTTATTGTGTGTGTGTAGGATTTACGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pennaria disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "GQ424342.1.1801_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "EU883545.1.1796_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "AY920762.1.1776_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962290.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962291.1.1674_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1194.0
|
id |
9e8884e1-7fc1-4a41-a418-90aaeb959285
|
scientificName |
Pennaria disticha
|
AphiaID |
117802
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-200
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGGCCAGTTGGTCCGCCGAAAGGTGTGTTACCGACTGGTCTGTTCTTCTTCGCAAAGACTGCTCATGCACTTTATTGTGTGTGTGTAGGATTTACGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pennaria disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962290.1.1674_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962291.1.1674_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "MH392743.1.634_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "GQ424342.1.1801_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "EU883545.1.1796_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
5.0
|
id |
135f1e47-b748-4c06-af9c-358f4411b9c9
|
scientificName |
Pennaria disticha
|
AphiaID |
117802
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-202
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGGCCAGTTGGTCCGCCGAAAGGTGTGTTACCGACTGGTCTGTTCTTCTTCGCAAAGACTGCTCATGCACTTTATTGTGTGTGTGTAGGATTTACGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pennaria disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962290.1.1674_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962291.1.1674_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "MH392743.1.634_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "GQ424342.1.1801_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "EU883545.1.1796_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
4.0
|
id |
273db28d-30b1-4160-817c-44723c0b1fa2
|
scientificName |
Pennaria disticha
|
AphiaID |
117802
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-201
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGGCCAGTTGGTCCGCCGAAAGGTGTGTTACCGACTGGTCTGTTCTTCTTCGCAAAGACTGCTCATGCACTTTATTGTGTGTGTGTAGGATTTACGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pennaria disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962290.1.1674_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_sp.",
"accession": "KF962291.1.1674_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "MH392743.1.634_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "GQ424342.1.1801_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pennaria_disticha",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117802",
"accession": "EU883545.1.1796_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|