Occurrences: |
view occurrences
id |
d37aeb2d-1751-477a-a65a-241a6ea4f698
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-55
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
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"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
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},
"annotations": [
{
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},
{
"method": "VSEARCH",
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{
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{
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{
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{
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}
]
}
|
organismQuantity |
6872.0
|
id |
73fd52fc-82d9-4dfc-b5b8-17a4a24eca3a
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-57
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
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"vsearch_cover_threshold": 0.97,
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},
{
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{
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{
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{
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{
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]
}
|
organismQuantity |
2067.0
|
id |
13883cc1-dece-48a1-9016-004869eb43aa
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-54
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
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{
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},
{
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{
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{
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{
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},
{
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}
]
}
|
organismQuantity |
1182.0
|
id |
7ced7369-59ee-4394-b15e-f2dd046796d4
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-56
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
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"vsearch_cover_threshold": 0.97,
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{
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{
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]
}
|
organismQuantity |
34.0
|
id |
bc2a27c1-899a-457a-8ef8-ffb88db5ad99
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-49
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
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{
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]
}
|
organismQuantity |
25.0
|
id |
a14934e4-72ea-4f71-8f6a-ef90898cc456
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
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]
}
|
organismQuantity |
9.0
|
id |
40cfbe77-8c47-4b41-a0ad-23e5ce854c9a
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-58
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
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"vsearch_cover_threshold": 0.97,
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]
}
|
organismQuantity |
5.0
|
id |
8d57f908-2872-454f-839a-fb0f8498c352
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-36
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
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|
organismQuantity |
5.0
|
id |
bbaf8426-d46e-41d1-896b-232261b8aacf
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-37
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
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{
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}
]
}
|
organismQuantity |
5.0
|
id |
57700a71-5571-4f1e-94b2-a4be56b372da
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-38
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
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{
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},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
f6a52b19-d33c-457d-b5c3-d02730943b5d
|
scientificName |
Ciona savignyi
|
AphiaID |
250292
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-50
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
|