PacMAN decision support system

Potential detection of Polydora hoplura in Fiji

Description:

Potential detection of Polydora hoplura with confidence low on 2022-02-01 in material sample S7, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Polydora hoplura
Annelida > Polychaeta > Spionida > Spionidae
WoRMS: 131146

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

68.0

Names:

6

Occurrences:

view occurrences

id	13d66a31-25c7-4088-8c14-e1f42065e9f6
scientificName	Polydora hoplura
AphiaID	131146
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S7
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Polydora uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Polydora_uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "accession": "AB705408.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_websteri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:153847", "accession": "AB705402.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_brevipalpa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:334572", "accession": "AB705407.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_haswelli", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330923", "accession": "AB705404.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_aura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330906", "accession": "AB705409.1.1771_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	68.0

id	9a5d0b51-54e6-4353-8331-2076f74541c5
scientificName	Polydora hoplura
AphiaID	131146
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S2
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Polydora uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Polydora_uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "accession": "AB705408.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_websteri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:153847", "accession": "AB705402.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_brevipalpa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:334572", "accession": "AB705407.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_haswelli", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330923", "accession": "AB705404.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_aura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330906", "accession": "AB705409.1.1771_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	16.0

id	f7df2bd1-034f-48ea-9ef8-8b5b2a278db0
scientificName	Polydora hoplura
AphiaID	131146
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S1
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Polydora uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Polydora_uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "accession": "AB705408.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_websteri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:153847", "accession": "AB705402.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_brevipalpa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:334572", "accession": "AB705407.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_haswelli", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330923", "accession": "AB705404.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_aura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330906", "accession": "AB705409.1.1771_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	13.0

id	267ab5d4-a3f0-48b5-8ce9-cd561a92944f
scientificName	Polydora hoplura
AphiaID	131146
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S17
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Polydora uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Polydora_uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "accession": "AB705408.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_websteri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:153847", "accession": "AB705402.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_brevipalpa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:334572", "accession": "AB705407.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_haswelli", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330923", "accession": "AB705404.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_aura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330906", "accession": "AB705409.1.1771_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	4.0

id	e37c5887-2fe5-4995-bd77-3b2822ccc7ef
scientificName	Polydora hoplura
AphiaID	131146
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Polydora uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Polydora_uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "accession": "AB705408.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_websteri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:153847", "accession": "AB705402.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_brevipalpa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:334572", "accession": "AB705407.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_haswelli", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330923", "accession": "AB705404.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_aura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330906", "accession": "AB705409.1.1771_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	bde48a13-4c8c-47b3-b77d-9792eab88465
scientificName	Polydora hoplura
AphiaID	131146
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S14
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Polydora uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Polydora_uncinata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330959", "accession": "AB705408.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_websteri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:153847", "accession": "AB705402.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_brevipalpa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:334572", "accession": "AB705407.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_haswelli", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330923", "accession": "AB705404.1.1771_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Polydora_aura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:330906", "accession": "AB705409.1.1771_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

Polydora hoplura in Fiji

Status

Polydora hoplura does not have an offial status in Fiji.

Notes

No notes found.