PacMAN decision support system

Potential detection of Apionsoma (Apionsoma) misakianum in Fiji

Description:

Potential detection of Apionsoma (Apionsoma) misakianum with confidence low on 2023-04-27 in material sample USP-24-01-01, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Apionsoma (Apionsoma) misakianum
Annelida > Sipuncula > Phascolosomatidae
WoRMS: 266492

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

18.0

Names:

Occurrences:

view occurrences

id	1bfdcc9a-7ad8-448f-993a-aa02395e2175
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-01
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	18.0

id	246d962e-c84e-40c2-968a-ef906462fd87
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-01
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	17.0

id	2b26620a-083c-4440-8081-c02f5b7bea32
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-02
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	61e4ef3f-a629-47c3-a7c2-059382cee2d8
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-20
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	1427045b-eb9f-44eb-8a88-215eaa17f6c5
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-08
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	4ed4817d-7ebc-42ed-adbc-f8af29e50f59
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-13
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Apionsoma (Apionsoma) misakianum has pest status in Fiji.

No notes found.