| Occurrences: |
view occurrences
| id |
1494e636-500c-44eb-ba1d-b558d5143920
|
| scientificName |
Pteria avicular
|
| AphiaID |
464504
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-04
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCACTCCTTGGTGGTCACTGCTCGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pteria avicular",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464504",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594368.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594366.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria colymbus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:420735",
"accession": "HQ329384.1.1754_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma physoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507102",
"accession": "HQ329387.1.1773_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria lata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464508",
"accession": "HQ329378.1.1775_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
155.0
|
| id |
82477be7-6da7-4c28-a7ae-fd3fed7cb6b8
|
| scientificName |
Pteria avicular
|
| AphiaID |
464504
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-13
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCACTCCTTGGTGGTCACTGCTCGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pteria avicular",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464504",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594368.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594366.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria colymbus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:420735",
"accession": "HQ329384.1.1754_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma physoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507102",
"accession": "HQ329387.1.1773_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria lata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464508",
"accession": "HQ329378.1.1775_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
a09fa771-f536-4db0-af12-40bbd238e40d
|
| scientificName |
Pteria avicular
|
| AphiaID |
464504
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-12
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCACTCCTTGGTGGTCACTGCTCGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pteria avicular",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464504",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594368.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594366.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria colymbus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:420735",
"accession": "HQ329384.1.1754_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma physoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507102",
"accession": "HQ329387.1.1773_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria lata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464508",
"accession": "HQ329378.1.1775_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|