PacMAN decision support system

Potential detection of Lyrodus pedicellatus in Fiji

Description:

Potential detection of Lyrodus pedicellatus with confidence low on 2024-02-28 in material sample USP-24-01-93, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Lyrodus pedicellatus
Mollusca > Bivalvia > Myida > Teredinidae
WoRMS: 141600

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

23.0

Names:

6

Occurrences:

view occurrences

id	936d16a2-40b9-455b-b8d3-f7f71e716ce7
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-93
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	23.0

id	39b65630-5a4f-4f24-8872-07fd92fcc561
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-94
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	20.0

id	395f5224-52da-4efb-8a14-18f34c7772eb
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-91
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	9.0

id	c28f3d01-887d-4fae-b4aa-8c269b5b40f0
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-92
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	4.0

id	c3b55b1f-728a-487a-940e-25ade60569d8
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-198
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	4.0

id	1523e9d0-987f-4dd9-aaff-9d3d79472483
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-196
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	203ad49a-c510-45e0-969c-d58ae8998b34
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-193
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	b4ddb320-eb2f-441f-812b-3b09b0765e6e
scientificName	Xylophaga
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-197
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Lyrodus pedicellatus in Fiji

Status

Lyrodus pedicellatus does not have an offial status in Fiji.

Notes

No notes found.