| Occurrences: |
view occurrences
| id |
e0218b97-8f58-4390-a3c2-6a1af783ff3d
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S47
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTCTTCGGAACCCGAGATAATGATTGAGAGGGACAGACGGGGGCACTTGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACAAACCCAGGCGAAAGCATTTGCCCAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903583.1.1887_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
47b20e26-03ac-4c07-918b-f7fcdbaf1607
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S63
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCTTCACGTGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGTGCGCCCCTGTGCGTTGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903584.1.1886_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
12.0
|
| id |
16433064-a4f2-4d28-9d80-75ec87d26f44
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S47
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTGGGGACGCCCTCTGTTGGTCCTGTGGGCAGACAGCTCCCGCAGCGCACTGCTGAGGGCTCCCAAGTGGCGGGGGGGCTCAGTGTTTCCCTCTTCACCGGGGGTGCTGTGGCCCTGCGCGAGCAGTCTCCGGTGTCATTGA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
}
]
}
|
| organismQuantity |
1.0
|
|