PacMAN decision support system

Potential detection of Lyrodus pedicellatus in Fiji

Description:

Potential detection of Lyrodus pedicellatus with confidence low on 2022-06-20 in material sample S50, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Lyrodus pedicellatus
Mollusca > Bivalvia > Myida > Teredinidae
WoRMS: 141600

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

160.0

Names:

Occurrences:

view occurrences

id	ffdd9ce9-9f2b-45f2-8bb3-7e3df8265a08
scientificName	Xylophaga
eventDate	2022-06-20
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S50
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	160.0

id	16685499-4a0e-4351-a6d4-eccd32bca536
scientificName	Xylophaga
eventDate	2022-06-20
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S52
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	23.0

id	5df2f828-1a49-448d-8508-775fe36c7c24
scientificName	Xylophaga
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	14.0

id	a10bce94-0e2a-454c-b0bf-4c8d894da32c
scientificName	Xylophaga
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S35
target_gene	18S
DNA_sequence	TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Xylophaga", "scientificNameID": "urn:lsid:marinespecies.org:taxname:138667", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Lyrodus pedicellatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141600", "accession": "AM774540.1.1791_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora fusticula", "accession": "JF899216.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Bankia gouldi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156749", "accession": "JF899204.1.1761_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Nausitora dunlopei", "scientificNameID": "urn:lsid:marinespecies.org:taxname:527839", "accession": "JF899215.1.1758_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lyrodus massa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397095", "accession": "JF899212.1.1758_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

Lyrodus pedicellatus in Fiji

Status

Lyrodus pedicellatus does not have an offial status in Fiji.

Notes

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No notes found.