PacMAN decision support system

Potential detection of Chaetoceros rostratus in Fiji

Description:

Potential detection of Chaetoceros rostratus with confidence medium on 2022-02-01 in material sample S19, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Chaetoceros rostratus
Heterokontophyta > Bacillariophyceae > Chaetocerotanae incertae sedis > Chaetocerotaceae
WoRMS: 178201

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

53.0

Names:

Occurrences:

view occurrences

id	bba054ed-d8f8-42fa-aa11-ac2cde24c9d4
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S19
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	53.0

id	e6a8ce6b-f502-4644-a707-c2c52d5f0c1f
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	39.0

id	b8c8beee-b746-47f4-b03a-078c72170411
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S20
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	30.0

id	e55242d9-a5c6-4ebd-8593-ad83de544331
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S17
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	23.0

id	4cc65a18-6fda-4186-b2bd-42747277f1a1
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S18
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	3b6b632f-02d6-4f3a-a515-9be4f82eee91
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S15
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	1669a269-30f7-42b8-bd15-2d4bf7e58da4
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S5
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Chaetoceros rostratus in Fiji

Status

Chaetoceros rostratus does not have an offial status in Fiji.

Notes

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No notes found.