| Occurrences: |
view occurrences
| id |
1766e286-d629-4a36-8f6e-2b9704fb34de
|
| scientificName |
Haliotis tuberculata
|
| AphiaID |
140059
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-44
|
| target_gene |
18S
|
| DNA_sequence |
CTGGTTTTTGGAGCTCAGGGGTAATGATTAAGAGGAACAGGGCGGGGGCATCCGTATTACGGCGTTAGAGGTGAAATTCTTGGATCGTCGTAAGACGCCCTACAGCGAAAGCATTTGCCAAGTATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Haliotis tuberculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140059",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Turbo sp.",
"accession": "HQ834053.1.1803_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lunella undulata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:579271",
"accession": "AM048692.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lepetodrilus fucensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:449972",
"accession": "AF534993.1.1184_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Guildfordia triumphans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:413405",
"accession": "AM048682.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bathymophila sp.",
"accession": "HE800801.1.984_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
86.0
|
| id |
6e6b1537-af38-4e25-8732-7565cca4d482
|
| scientificName |
Haliotis tuberculata
|
| AphiaID |
140059
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-45
|
| target_gene |
18S
|
| DNA_sequence |
CTGGTTTTTGGAGCTCAGGGGTAATGATTAAGAGGAACAGGGCGGGGGCATCCGTATTACGGCGTTAGAGGTGAAATTCTTGGATCGTCGTAAGACGCCCTACAGCGAAAGCATTTGCCAAGTATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Haliotis tuberculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140059",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Turbo sp.",
"accession": "HQ834053.1.1803_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lunella undulata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:579271",
"accession": "AM048692.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lepetodrilus fucensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:449972",
"accession": "AF534993.1.1184_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Guildfordia triumphans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:413405",
"accession": "AM048682.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bathymophila sp.",
"accession": "HE800801.1.984_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
16.0
|
| id |
70026077-8aa8-487b-a6e5-6ecd1cf51431
|
| scientificName |
Haliotis tuberculata
|
| AphiaID |
140059
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-34
|
| target_gene |
18S
|
| DNA_sequence |
CTGGTTTTTGGAGCTCAGGGGTAATGATTAAGAGGAACAGGGCGGGGGCATCCGTATTACGGCGTTAGAGGTGAAATTCTTGGATCGTCGTAAGACGCCCTACAGCGAAAGCATTTGCCAAGTATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Haliotis tuberculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140059",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Turbo sp.",
"accession": "HQ834053.1.1803_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lunella undulata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:579271",
"accession": "AM048692.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lepetodrilus fucensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:449972",
"accession": "AF534993.1.1184_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Guildfordia triumphans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:413405",
"accession": "AM048682.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bathymophila sp.",
"accession": "HE800801.1.984_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
dc1b1c7c-59ec-4e60-8e6f-f5d8e48cd816
|
| scientificName |
Haliotis tuberculata
|
| AphiaID |
140059
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-33
|
| target_gene |
18S
|
| DNA_sequence |
CTGGTTTTTGGAGCTCAGGGGTAATGATTAAGAGGAACAGGGCGGGGGCATCCGTATTACGGCGTTAGAGGTGAAATTCTTGGATCGTCGTAAGACGCCCTACAGCGAAAGCATTTGCCAAGTATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Haliotis tuberculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140059",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Turbo sp.",
"accession": "HQ834053.1.1803_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lunella undulata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:579271",
"accession": "AM048692.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lepetodrilus fucensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:449972",
"accession": "AF534993.1.1184_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Guildfordia triumphans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:413405",
"accession": "AM048682.1.984_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bathymophila sp.",
"accession": "HE800801.1.984_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|