| Occurrences: |
view occurrences
| id |
179f2baf-afae-4c89-833e-a1818a49cc49
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S45
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
6d9caa7d-5c0e-47d5-85d7-11195014b2fe
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S48
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
|