PacMAN decision support system

Potential detection of Ostrea equestris in Fiji

Description:

Potential detection of Ostrea equestris with confidence medium on 2022-05-25 in material sample S152, marker COI

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ostrea equestris
Mollusca > Bivalvia > Ostreida > Ostreidae
WoRMS: 156924

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.997

Reads:

1818.0

Names:

Occurrences:

view occurrences

id	f46601de-e5c8-45ca-ab65-843398bb55ed
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S152
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	1818.0

id	5deec11f-af99-425c-bc47-d63337d9bf26
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S154
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	16.0

id	17bfe457-97dc-4fca-bfef-b546a2fd7128
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S136
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	2.0

id	1b7194e8-2dd6-4f4f-bf83-f5708a5eb549
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S153
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	2.0

id	fe532b1d-45f2-4f7d-a576-b6d9dd4e193a
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S152
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.97 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317496", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317497", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317500", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317501", "identity": 0.995, "query_cover": 0.995 } ] }
organismQuantity	6.0

Ostrea equestris in Fiji

Status

Ostrea equestris does not have an offial status in Fiji.

Notes

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No notes found.