| Occurrences: |
view occurrences
| id |
a0f795fc-4c3d-4676-be44-d85ac5c2ac80
|
| scientificName |
Clytia linearis
|
| AphiaID |
117370
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S9
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGGCGCTGGTGGGACGGTCGGCCGCGAGGTCTGTTACTGTCTCTCCGTGCCATCACATTCTCGGAGACCCGTCGTGCACTTCGCTGTGCGCGGCGTGGGACTCGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Clytia linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789747.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "DQ064794.1.1691_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789748.1.1565_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
13.0
|
| id |
bf60fced-7de8-479d-a3ce-e3fde0b5091e
|
| scientificName |
Clytia linearis
|
| AphiaID |
117370
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGGCGCTGGTGGGACGGTCGGCCGCGAGGTCTGTTACTGTCTCTCCGTGCCATCACATTCTCGGAGACCCGTCGTGCACTTCGCTGTGCGCGGCGTGGGACTCGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Clytia linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789747.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "DQ064794.1.1691_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789748.1.1565_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
7.0
|
| id |
181aedf0-65c3-4315-8dca-84ac56ff7e66
|
| scientificName |
Clytia linearis
|
| AphiaID |
117370
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGGCGCTGGTGGGACGGTCGGCCGCGAGGTCTGTTACTGTCTCTCCGTGCCATCACATTCTCGGAGACCCGTCGTGCACTTCGCTGTGCGCGGCGTGGGACTCGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Clytia linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789747.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "DQ064794.1.1691_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789748.1.1565_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|