| Occurrences: |
view occurrences
| id |
912de607-0d1d-4fe3-8083-0580a15a7deb
|
| scientificName |
Polydora hoplura
|
| AphiaID |
131146
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-48
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Polydora uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Polydora_uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"accession": "AB705408.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_websteri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:153847",
"accession": "AB705402.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_brevipalpa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:334572",
"accession": "AB705407.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_haswelli",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330923",
"accession": "AB705404.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_aura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330906",
"accession": "AB705409.1.1771_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
9.0
|
| id |
727e6753-b479-4590-b112-2f37f963f65d
|
| scientificName |
Polydora hoplura
|
| AphiaID |
131146
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-37
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Polydora uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Polydora_uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"accession": "AB705408.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_websteri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:153847",
"accession": "AB705402.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_brevipalpa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:334572",
"accession": "AB705407.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_haswelli",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330923",
"accession": "AB705404.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_aura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330906",
"accession": "AB705409.1.1771_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
19256487-c3bc-4742-bec8-066d0d7bf8a5
|
| scientificName |
Polydora hoplura
|
| AphiaID |
131146
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-50
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Polydora uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Polydora_uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"accession": "AB705408.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_websteri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:153847",
"accession": "AB705402.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_brevipalpa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:334572",
"accession": "AB705407.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_haswelli",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330923",
"accession": "AB705404.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_aura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330906",
"accession": "AB705409.1.1771_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
ae5b56d6-d3e5-4e58-b885-7b2f80971dbc
|
| scientificName |
Polydora hoplura
|
| AphiaID |
131146
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-57
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCACGGTTAGAGGTGAAATTCTTGGATCCGTGCAAGACGAACTACAGCGAAGGCGTCTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Polydora uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Polydora_uncinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330959",
"accession": "AB705408.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_websteri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:153847",
"accession": "AB705402.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_brevipalpa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:334572",
"accession": "AB705407.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_haswelli",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330923",
"accession": "AB705404.1.1771_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Polydora_aura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:330906",
"accession": "AB705409.1.1771_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|