| Occurrences: |
view occurrences
| id |
d8ebc38f-f5f2-433e-9dd0-feaebdcc30e1
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S45
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGGGCGGTCCGGCGGTCCTCCTCGCGGAGGTATACTGCCGCGACTGCTCTCACCTCACCGGCTCTCCCCGGGTGCTCTTCGCTGAGTGCCCGAGGCGGCCGGAATGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.94
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546257.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
3adf30ee-d6b5-47bf-86c3-17f0766555fe
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S46
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGGGCGGTCCGGCGGTCCTCCTCGCGGAGGTATACTGCCGCGACTGCTCTCACCTCACCGGCTCTCCCCGGGTGCTCTTCGCTGAGTGCCCGAGGCGGCCGGAATGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.94
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546257.1.1763_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
949ac71d-6341-4085-bdde-f268c23f582a
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S46
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Polydora_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131141",
"accession": "U50971.1.1684_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
19b4b94a-5479-4651-bea5-c063851f4fb3
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S45
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Polydora_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131141",
"accession": "U50971.1.1684_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|