PacMAN decision support system

Potential detection of Magallana gigas in Fiji

Description:

Potential detection of Magallana gigas with confidence low on 2022-02-16 in material sample S22, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Magallana gigas
Mollusca > Bivalvia > Ostreida > Ostreidae
WoRMS: 836033

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

344.0

Names:

4

Occurrences:

view occurrences

id	f079e3f5-50cb-491b-b55b-ac856af4379b
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S22
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	344.0

id	70739100-7828-4872-9df2-68a0086c4a86
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	19.0

id	49171f44-9bb1-42c8-9051-94fde6ed79e8
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	18.0

id	1a30cae9-eaa4-4d6f-a460-f9d0b75aa9f3
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S21
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	17.0

id	9eca7ddb-ab9c-4b94-8eaa-dca44defc7d6
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S22
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	12.0

id	2f10c018-e4e5-4671-a146-e89b2e78ce26
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S21
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	9.0

id	2d01b237-c5e0-40cc-9e46-a5d724429e73
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S9
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	4.0

id	8650817b-ae1f-43ad-ab99-3d070e5f1f53
scientificName	Magallana gigas
AphiaID	836033
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S23
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	2.0

Magallana gigas in Fiji

Status

Magallana gigas does not have an offial status in Fiji.

Notes

No notes found.