PacMAN decision support system

Potential detection of Ostrea equestris in Fiji

Description:

Potential detection of Ostrea equestris with confidence medium on 2023-11-28 in material sample USP-24-01-172, marker COI

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ostrea equestris
Mollusca > Bivalvia > Ostreida > Ostreidae
WoRMS: 156924

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.997

Reads:

2666.0

Names:

2

Occurrences:

view occurrences

id	fecf2e0f-763f-4f8e-92ae-45ebb70bca9b
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S3A
materialSampleID	USP-24-01-172
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	2666.0

id	3f052542-458a-45ad-a206-8702b965590b
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S2C
materialSampleID	USP-24-01-171
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	1599.0

id	c7cc16d9-99d8-4896-8acb-6507ddc9af88
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S3B
materialSampleID	USP-24-01-173
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	66.0

id	1a92ebe5-e9af-43a0-bd76-6a55ff790c52
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_WC
materialSampleID	USP-24-01-165
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	1.0

id	b562c059-d58c-4b2d-9dfb-f271076f48dc
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S2C
materialSampleID	USP-24-01-171
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.97 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317496", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317497", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317500", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317501", "identity": 0.995, "query_cover": 0.995 } ] }
organismQuantity	5.0

id	8e01c5f2-0cab-4b2a-b135-deab77ae7dcc
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S3A
materialSampleID	USP-24-01-172
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.97 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317496", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317497", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317500", "identity": 0.995, "query_cover": 0.995 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317501", "identity": 0.995, "query_cover": 0.995 } ] }
organismQuantity	1.0

id	25337d7d-169c-4329-a802-14874d5a0578
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S3A
materialSampleID	USP-24-01-172
target_gene	COI
DNA_sequence	TGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAAGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317502", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.993, "query_cover": 0.9933 } ] }
organismQuantity	6.0

id	7a70fdac-ab4a-4b42-bd80-875882bf4462
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S2C
materialSampleID	USP-24-01-171
target_gene	COI
DNA_sequence	TGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAAGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317502", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.993, "query_cover": 0.9933 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.993, "query_cover": 0.9933 } ] }
organismQuantity	1.0

Ostrea equestris in Fiji

Status

Ostrea equestris does not have an offial status in Fiji.

Notes

No notes found.