| Occurrences: |
view occurrences
| id |
1abbc331-8b52-4ad9-b046-638acc9ee4b6
|
| scientificName |
Xenostrobus securis
|
| AphiaID |
140485
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S87
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTGGCGGTCCGGCGCATGCCGGTTACTGCTTGTCCTGACCTACCTCCCGGTCGCGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTCGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "EF186010.1.874_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949127.1.1708_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "EF186014.1.874_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "EF186008.1.874_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "DQ984672.1.877_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
39.0
|
| id |
75bbcfb0-de6d-4121-9540-7d2c5a8e6d3c
|
| scientificName |
Mytiloides
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S87
|
| target_gene |
18S
|
| DNA_sequence |
TGCTGGTTTTCGGAGCTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACCGCTGCGAAAGCGTTTGCCAAGAATGTTTTCATTAGTCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mytiloida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1506984",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949127.1.1708_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949125.1.1657_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949134.1.1652_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949124.1.1657_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Xenostrobus securis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140485",
"accession": "FJ949130.1.1680_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
32.0
|
|