PacMAN decision support system

Potential detection of Ostrea stentina in Fiji

Description:

Potential detection of Ostrea stentina with confidence medium on 2024-02-28 in material sample USP-24-01-214, marker COI

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ostrea stentina
Mollusca > Bivalvia > Ostreida > Ostreidae
WoRMS: 489077

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.997

Reads:

1337.0

Names:

Occurrences:

view occurrences

id	6c602680-19c3-4bd1-8885-a94111ecf6c3
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_S2C
materialSampleID	USP-24-01-214
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	1337.0

id	d7a9cf83-d8e7-4ead-bd6f-82adc2e2c369
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_S2B
materialSampleID	USP-24-01-213
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	17.0

id	b6013ed0-77ea-41b7-a388-75aca75d729a
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_WA
materialSampleID	USP-24-01-208
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	8.0

id	1ad4a13d-ca07-4142-8161-2dafc05ab5d2
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20240228_WB
materialSampleID	USP-24-01-209
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	2.0

id	96c794e7-cab1-46ce-b1c2-92cb20e3a83f
scientificName	Ostrea equestris
AphiaID	156924
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20240228_WC
materialSampleID	USP-24-01-207
target_gene	COI
DNA_sequence	TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Ostrea equestris", "scientificNameID": "urn:lsid:marinespecies.org:taxname:156924", "accession": "KT317498", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226522", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ226523", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640081", "identity": 0.997, "query_cover": 0.9967 }, { "method": "VSEARCH", "scientificName": "Ostrea stentina", "scientificNameID": "urn:lsid:marinespecies.org:taxname:489077", "accession": "DQ640082", "identity": 0.997, "query_cover": 0.9967 } ] }
organismQuantity	2.0

Ostrea stentina in Fiji

Status

Ostrea stentina does not have an offial status in Fiji.

Notes

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