Occurrences: |
view occurrences
id |
4b20816a-85aa-490e-a1e7-bfb2ce3e164e
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-55
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1626.0
|
id |
67d3a8ad-9756-4225-9c06-76d863d0979b
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-56
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
786.0
|
id |
265eaa14-f40c-4ea6-87e1-b88f3ade6185
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-57
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
736.0
|
id |
311d306c-3898-4fe8-86da-f0843d687697
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-58
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
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},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
521.0
|
id |
b60c45ea-880b-4893-a7e2-6a34a6957977
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-54
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
417.0
|
id |
36af5862-f24a-4217-bfc3-def4cc5e0665
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-58
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.99,
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},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
362.0
|
id |
f4f7686b-3ec4-43f7-a6db-393cceaf3742
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
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},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
183.0
|
id |
f1f88e58-849d-442d-977b-872dd608ab0f
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-55
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
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"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
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},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
7.0
|
id |
1ad5ed60-84d8-422e-bc72-d32738414348
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-36
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
5.0
|
id |
dfb9655f-6fe4-4d61-9ba5-12352fd6b24a
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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decimalLongitude |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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decimalLongitude |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
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identificationRemarks |
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identificationRemarks |
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scientificName |
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decimalLongitude |
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|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
99958f57-8903-4a09-863b-d656439a0074
|
scientificName |
Magallana gigas
|
AphiaID |
836033
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-38
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AB064942.1.1820_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "AFTI01027729.1.1382_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea edulis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140658",
"accession": "EU660786.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea gigas",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140656",
"accession": "EU660790.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ostrea chilensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397160",
"accession": "EU660788.1.875_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|