| Occurrences: |
view occurrences
| id |
9e3dd92f-1318-4708-aec1-8dea4661cd27
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-03
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
11.0
|
| id |
1b0af292-e6ae-43eb-89ad-87fe56a71cf9
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-13
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
|