| Occurrences: |
view occurrences
| id |
e49682a5-b700-4f6d-8bc1-a37fddb2f218
|
| scientificName |
Botryllus
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATATTGGGCGAGCGCGGTCGGTCCGTCGCAGGGCGTGTACTGGTCGCGTTCGTCTCGAGCTTCGGTTCTCCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botryllus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103529",
"confidence": 0.86
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "FM244858.1.1786_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.981,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
55.0
|
| id |
1b940071-7e98-40b7-b753-3060ef251608
|
| scientificName |
Botryllus
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATATTGGGCGAGCGCGGTCGGTCCGTCGCAGGGCGTGTACTGGTCGCGTTCGTCTCGAGCTTCGGTTCTCCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botryllus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103529",
"confidence": 0.86
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "FM244858.1.1786_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.981,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
29.0
|
| id |
78fe4656-9b49-42a4-84ea-d76387a76117
|
| scientificName |
Botryllus
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATATTGGGCGAGCGCGGTCGGTCCGTCGCAGGGCGTGTACTGGTCGCGTTCGTCTCGAGCTTCGGTTCTCCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botryllus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103529",
"confidence": 0.86
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "FM244858.1.1786_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.981,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
12.0
|
|