| Occurrences: |
view occurrences
| id |
1b9683f5-1a96-48ed-b2b9-3533400bdc5c
|
| scientificName |
Bugula neritina
|
| AphiaID |
111158
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S107
|
| target_gene |
COI
|
| DNA_sequence |
TTATCATCGGGCTTAGGTCACAGAGGAGCAGCTGTGGATTTAGCCATTTTCTCTTTACACCTTGCCGGTGTATCCTCAATTTTAGGAGCAATTAACTTTATTACTACAACAATTAATATACGAAGAAACTCTATAAAAATAATTCAAATCCCTTTATTTATTTGGGCAGTTTTTATTACAGCCATTTTGTTACTTTTATCTTTACCAGTGCTAGCTGGAGCTATTACTATACTACTAACCGATCGTAATGTTAATACATCTTTTTTTGACCCTGCTGGAGGGGGGGATCCTATTTTATACCAACACTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129735",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129736",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129737",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129738",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129739",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
26.0
|
| id |
3a09a076-4b51-4884-9619-cb828156e6d8
|
| scientificName |
Bugula neritina
|
| AphiaID |
111158
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S106
|
| target_gene |
COI
|
| DNA_sequence |
TTATCATCGGGCTTAGGTCACAGAGGAGCAGCTGTGGATTTAGCCATTTTCTCTTTACACCTTGCCGGTGTATCCTCAATTTTAGGAGCAATTAACTTTATTACTACAACAATTAATATACGAAGAAACTCTATAAAAATAATTCAAATCCCTTTATTTATTTGGGCAGTTTTTATTACAGCCATTTTGTTACTTTTATCTTTACCAGTGCTAGCTGGAGCTATTACTATACTACTAACCGATCGTAATGTTAATACATCTTTTTTTGACCCTGCTGGAGGGGGGGATCCTATTTTATACCAACACTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129735",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129736",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129737",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129738",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129739",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
4.0
|
| id |
b3953685-7ba3-4ebc-8fb1-24e2a7afec91
|
| scientificName |
Bugula neritina
|
| AphiaID |
111158
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S97
|
| target_gene |
COI
|
| DNA_sequence |
TTATCATCGGGCTTAGGTCACAGAGGAGCAGCTGTGGATTTAGCCATTTTCTCTTTACACCTTGCCGGTGTATCCTCAATTTTAGGAGCAATTAACTTTATTACTACAACAATTAATATACGAAGAAACTCTATAAAAATAATTCAAATCCCTTTATTTATTTGGGCAGTTTTTATTACAGCCATTTTGTTACTTTTATCTTTACCAGTGCTAGCTGGAGCTATTACTATACTACTAACCGATCGTAATGTTAATACATCTTTTTTTGACCCTGCTGGAGGGGGGGATCCTATTTTATACCAACACTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129735",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129736",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129737",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129738",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129739",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1.0
|
|