PacMAN decision support system

Potential detection of Loimia medusa in Fiji

Description:

Potential detection of Loimia medusa with confidence medium on 2024-02-28 in material sample USP-24-01-196, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Loimia medusa
Annelida > Polychaeta > Terebellida > Terebellidae
WoRMS: 131499

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

35.0

Names:

Occurrences:

view occurrences

id	d26a6bf7-533a-4d47-8976-6449a4acb1d4
scientificName	Loimia medusa
AphiaID	131499
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-196
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	35.0

id	dc48c17a-835d-4372-a023-899dc0c642aa
scientificName	Loimia medusa
AphiaID	131499
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-197
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	16.0

id	a753df9f-fa10-4223-b7d5-9cbdc25ca7b8
scientificName	Loimia medusa
AphiaID	131499
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-202
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	13.0

id	7b5ffac5-8170-47a3-81cf-56d3ae53b406
scientificName	Loimia medusa
AphiaID	131499
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-198
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	9.0

id	519844f0-4eb0-4bb5-b7b0-91687956cc93
scientificName	Loimia medusa
AphiaID	131499
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-201
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	1becec1a-66f2-4e8c-8dfc-e19eca5b3c0f
scientificName	Loimia medusa
AphiaID	131499
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-96
target_gene	18S
DNA_sequence	TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Loimia medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Loimia_medusa", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131499", "accession": "AY040690.1.1756_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Lanice_conchilega", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131495", "accession": "JN936470.1.1658_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Loimia medusa does not have an offial status in Fiji.

No notes found.