PacMAN decision support system

Potential detection of Leptocylindrus danicus in Fiji

Description:

Potential detection of Leptocylindrus danicus with confidence low on 2023-08-24 in material sample USP-24-01-30, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Leptocylindrus danicus
Heterokontophyta > Bacillariophyceae > Leptocylindrales > Leptocylindraceae
WoRMS: 149106

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

3.0

Names:

Occurrences:

view occurrences

id	2034aca2-6eb8-4bca-8349-98e79762d9bf
scientificName	Leptocylindrus
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-30
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	1cc49ada-43a3-4976-8166-4a2ed4ff17e2
scientificName	Leptocylindrus
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-34
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	24c51700-e4f5-425d-8bfe-d6993e281f03
scientificName	Leptocylindrus
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	299c3091-6184-4e5a-8db3-56b3e421aaff
scientificName	Leptocylindrus
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	f392477f-1723-420a-a842-6ce64145ff4d
scientificName	Leptocylindrus
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-30
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	ff715d6f-03f9-4186-a5e6-d0729a76bf55
scientificName	Leptocylindrus
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-34
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	2.0

Leptocylindrus danicus in Fiji

Status

Leptocylindrus danicus does not have an offial status in Fiji.

Notes

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