| Occurrences: |
view occurrences
| id |
1cfa3caf-1cb6-4459-a86a-4c19d2609f9f
|
| scientificName |
Paramphiascella fulvofasciata
|
| AphiaID |
115960
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"accession": "EU380293.1.1808_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amphiascoides atopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:348699",
"accession": "KC815328.1.1808_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sarsamphiascus kawamurai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:549150",
"accession": "MN541391.1.1767_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sarsamphiascus hawaiiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816",
"accession": "MN496456.1.1692_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
67.0
|
| id |
68ecff18-2931-4e17-afb1-07b85d40712f
|
| scientificName |
Paramphiascella fulvofasciata
|
| AphiaID |
115960
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"accession": "EU380293.1.1808_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amphiascoides atopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:348699",
"accession": "KC815328.1.1808_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|