PacMAN decision support system

Potential detection of Halocynthia roretzi in Fiji

Description:

Potential detection of Halocynthia roretzi with confidence low on 2022-06-20 in material sample S68, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Halocynthia roretzi
Chordata > Ascidiacea > Stolidobranchia > Pyuridae
WoRMS: 250680

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

2304.0

Names:

7

Occurrences:

view occurrences

id	317b37d3-612d-44b5-8a4d-0d9923bb9d24
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S68
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2304.0

id	5bed8924-a240-4239-8fea-b358b96cd295
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	124.0

id	86ec2ba2-2e96-4a64-8231-ec71c46b1b8c
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S67
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	75.0

id	2148d98b-a585-4c12-a3cb-7eb75dc21700
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S41
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	37.0

id	3bebfcd9-86e2-4206-a5b6-75483481143d
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S35
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	16.0

id	41863bff-f50b-493b-8bc4-07f5bcfe6dd1
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S61
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	12.0

id	8dcf6102-22e5-4d4f-8c15-3db6db200fce
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S56
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	11.0

id	1d03205b-d083-4e9a-bc93-30e0371259c9
scientificName	Pyura
eventDate	2022-06-20
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S60
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pyura", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103524", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Metandrocarpa_taylori", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250836", "accession": "AY903922.1.1772_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_roretzi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250680", "accession": "AB013016.1.1751_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Cnemidocarpa_finmarkiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103870", "accession": "L12413.1.1763_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pyura_haustor", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251266", "accession": "AY903926.1.1774_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Halocynthia_igaboja", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250677", "accession": "AY903925.1.1772_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	8.0

Halocynthia roretzi in Fiji

Status

Halocynthia roretzi does not have an offial status in Fiji.

Notes

No notes found.