| Occurrences: |
view occurrences
| id |
7a370c4f-1927-4bd8-a23f-bbc894ae53c7
|
| scientificName |
Patelloida pygmaea
|
| AphiaID |
456638
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-90
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCCTATATCGGAGTTGCTGCGGTTAAAAAGCTCGTCGTTGGATCTCGGAGGCGGCACGGTCGGGCGCGATACGCTGCGGGTCCGACCGGCGATTTCTCGGCCGTCCCTAACCGGCGCGCGGGGCGAGGAGGACTTCGCGGTCCTTCCTCGTTTTTCTTCTTCTTAGGGAGAAAACCCGCCGCATT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"accession": "AB282765.1.1024_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lepeta caeca_pacifica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456693",
"accession": "AB282759.1.1031_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
1d6af231-f765-45d5-9108-568fbecbfd8a
|
| scientificName |
Patelloida pygmaea
|
| AphiaID |
456638
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCCTATATCGGAGTTGCTGCGGTTAAAAAGCTCGTCGTTGGATCTCGGAGGCGGCACGGTCGGGCGCGATACGCTGCGGGTCCGACCGGCGATTTCTCGGCCGTCCCTAACCGGCGCGCGGGGCGAGGAGGACTTCGCGGTCCTTCCTCGTTTTTCTTCTTCTTAGGGAGAAAACCCGCCGCATT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"accession": "AB282765.1.1024_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lepeta caeca_pacifica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456693",
"accession": "AB282759.1.1031_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
410cf076-0a99-4b07-914b-c6c5d517dfd6
|
| scientificName |
Patelloida pygmaea
|
| AphiaID |
456638
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCCTATATCGGAGTTGCTGCGGTTAAAAAGCTCGTCGTTGGATCTCGGAGGCGGCACGGTCGGGCGCGATACGCTGCGGGTCCGACCGGCGATTTCTCGGCCGTCCCTAACCGGCGCGCGGGGCGAGGAGGACTTCGCGGTCCTTCCTCGTTTTTCTTCTTCTTAGGGAGAAAACCCGCCGCATT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Patelloida pygmaea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456638",
"accession": "AB282765.1.1024_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lepeta caeca_pacifica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:456693",
"accession": "AB282759.1.1031_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
|