PacMAN decision support system

Potential detection of Apionsoma (Apionsoma) misakianum in Fiji

Description:

Potential detection of Apionsoma (Apionsoma) misakianum with confidence low on 2023-08-24 in material sample USP-24-01-32, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Apionsoma (Apionsoma) misakianum
Annelida > Sipuncula > Phascolosomatidae
WoRMS: 266492

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

3.0

Names:

Occurrences:

view occurrences

id	36174a31-c824-4eb7-8ddf-eff0f311d769
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-32
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	d150ef77-772e-4d9b-9e94-e7404f4b5f88
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-32
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	1db58e84-301f-4e3a-8984-975274658c64
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	3a8d2d08-4083-4d47-96e5-5450c0437354
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	e2b5452a-bf52-4229-bd7a-7b9ddd63d177
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	e8ba3c4b-a00f-46e7-9170-b1d5bd572c5f
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Apionsoma (Apionsoma) misakianum has pest status in Fiji.

No notes found.