PacMAN decision support system

Potential detection of Obelia bidentata in Fiji

Description:

Potential detection of Obelia bidentata with confidence low on 2024-02-28 in material sample USP-24-01-202, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Obelia bidentata
Cnidaria > Hydrozoa > Leptothecata > Campanulariidae
WoRMS: 117385

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

3.0

Names:

Occurrences:

view occurrences

id	e16ca5e5-1fc6-42cd-bd6c-2430916bed22
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-202
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGACTGGGGTGCGACGGTCAGCCTAACACTGGTCTGCACCGTCTCGCGCCACGGTCATCACATCTCCCAGAGGACCTGTCGTGTACTTAACTGTGCGCGGCATTCGGGACTCGGGACGTTTACTTTGAAAAAATTAGAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	700419f0-5704-4571-9f70-47aca7b0359e
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-197
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGACTGGGGTGCGACGGTCAGCCTAACACTGGTCTGCACCGTCTCGCGCCACGGTCATCACATCTCCCAGAGGACCTGTCGTGTACTTAACTGTGCGCGGCATTCGGGACTCGGGACGTTTACTTTGAAAAAATTAGAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	1e33aa18-de4f-4f1f-9fd2-20b1b43cb185
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-202
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAATTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	826ac448-52f9-436a-9a7f-9f57369b00d2
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2024-02-28
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-93
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAATTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	43d07610-71a7-4c34-b5d9-3490947da1d7
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2024-02-28
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-197
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAATTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Obelia bidentata does not have an offial status in Fiji.

No notes found.