| Occurrences: |
view occurrences
| id |
1e70b437-dfe2-4186-b1bd-d6c3de276118
|
| scientificName |
Clytia
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAAAACCGCAGTAATGATTAAGAGGGACAATTGGGGGCGTCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCATTCGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Clytia",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117030",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789747.1.1693_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "DQ064794.1.1691_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789748.1.1565_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_sp.",
"accession": "KF962233.1.1714_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_sp.",
"accession": "KF962234.1.1714_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
3b7b82ec-b333-47ee-a868-2d9c1a5425b4
|
| scientificName |
Clytia
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAAAACCGCAGTAATGATTAAGAGGGACAATTGGGGGCGTCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCATTCGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Clytia",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117030",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789747.1.1693_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "DQ064794.1.1691_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789748.1.1565_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_sp.",
"accession": "KF962233.1.1714_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Clytia_sp.",
"accession": "KF962234.1.1714_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
2cc06f5d-dd33-4344-807a-1be8d60da06e
|
| scientificName |
Clytia linearis
|
| AphiaID |
117370
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGGCGCTGGTGGGACGGTCGGCCGCGAGGTCTGTTACTGTCTCTCCGTGCCATCACATTCTCGGAGACCCGTCGTGCACTTCGCTGTGCGCGGCGTGGGACTCGAGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Clytia linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789747.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "DQ064794.1.1691_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Clytia_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117370",
"accession": "AY789748.1.1565_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|