| Occurrences: |
view occurrences
| id |
adbf66be-7d3a-45b1-99f7-2973c7c15fbb
|
| scientificName |
Perophora viridis
|
| AphiaID |
103761
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S173
|
| target_gene |
COI
|
| DNA_sequence |
ATTGTCTAGTGGTATCGCTCATTCTGGGCCTGCCGTGGATTGTGCTATTTTTTCCCTTCACTTGGCTGGGGTTTCTAGTATCCTGGGTTCTATGAACTTTTTGGTTACTATTATAAATATGAAAGTTAAGGGGTTTGGAATGATAGATTTGACATTGTTTTGTTGATCTATTGTTTTTACAACAATTTTGTTGGTTTTATCTCTTCCTGTTTTAGCTGCTGCTATTACTATGCTTTTATTAGACCGTAATATTAATACGAGTTTCTTTGATCCTGGTGGTAGGGGAGACCCAATTCTATTTCAACATTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "MT637972",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "OM912739",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "OM912740",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "OM912741",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "MW621883",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
55.0
|
| id |
1f004cd2-46ca-4034-9d0d-ce4041cfe2e3
|
| scientificName |
Perophora viridis
|
| AphiaID |
103761
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S178
|
| target_gene |
COI
|
| DNA_sequence |
ATTGTCTAGTGGTATCGCTCATTCTGGGCCTGCCGTGGATTGTGCTATTTTTTCCCTTCACTTGGCTGGGGTTTCTAGTATCCTGGGTTCTATGAACTTTTTGGTTACTATTATAAATATGAAAGTTAAGGGGTTTGGAATGATAGATTTGACATTGTTTTGTTGATCTATTGTTTTTACAACAATTTTGTTGGTTTTATCTCTTCCTGTTTTAGCTGCTGCTATTACTATGCTTTTATTAGACCGTAATATTAATACGAGTTTCTTTGATCCTGGTGGTAGGGGAGACCCAATTCTATTTCAACATTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "MT637972",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "OM912739",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "OM912740",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "OM912741",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Perophora viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103761",
"accession": "MW621883",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
11.0
|
|