| Occurrences: |
view occurrences
| id |
65c81fec-586f-47db-93c0-2ee7265c85e1
|
| scientificName |
Temora
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-11
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATTTCGGCGGGTATTGGTCGGTTTGAATTGCTTCAATACTGACTTTTTTACCCGTGTGTTTTGCCAGAATTTAACGGGTGATCTTCGCCGATTGTCTGTTAGAACTGGCAGGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Temora",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104241",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Temora turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104880",
"accession": "GU969211.1.1738_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Maxillopoda_X_sp.",
"accession": "AY962535.1.1803_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Temora longicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104878",
"accession": "JX995309.1.1749_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Temora longicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104878",
"accession": "JX995310.1.1749_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Temora longicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104878",
"accession": "JX995308.1.1749_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
385.0
|
| id |
1f00d693-60da-4c11-ac35-e8b62cf79adf
|
| scientificName |
Temora
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-11
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTGAAAAGCTCGTAGTTGGATTTCGGCGGGTATTGGTCGGTTCGAATTGCTTCAATACTGACTTTTTTACCCGTGTGTTTTGCCAGAATTTAACGGGTGATCTTCGCCGATTGTCTGTTAGAACTGGCAGGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Temora",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104241",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Temora turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104880",
"accession": "GU969211.1.1738_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Maxillopoda_X_sp.",
"accession": "AY962535.1.1803_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Temora longicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104878",
"accession": "JX995309.1.1749_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Temora longicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104878",
"accession": "JX995310.1.1749_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Temora longicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104878",
"accession": "JX995308.1.1749_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
43.0
|
|