| Occurrences: |
view occurrences
| id |
1f0ac6fe-abc5-4c96-a378-c353f9eb5eb3
|
| scientificName |
Sundstroemia similoides
|
| AphiaID |
1590709
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTTAGAATAGTCGGTCTTGCACTCAGTGTAAGTACCAGACTCTTCTTCCCATCTTTAGGGAGAACTCATATGGCATTAATTTGTTGTGTGATGTATCCTTATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Rhizosolenia similoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:160531",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia setigera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149115",
"accession": "AB430589.1.1773_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia pungens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149117",
"accession": "JQ315683.1.1260_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia setigera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149115",
"accession": "JQ315685.1.1265_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149116",
"accession": "AJ535178.1.1801_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia setigera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149115",
"accession": "AY485508.1.1721_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
7f3f9e08-9c23-4180-ac1a-852eb78b5b86
|
| scientificName |
Rhizosolenia
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGTGCACCATGGTAATGATTAAAAGAAACAGTCAGGGGTATTAGTATTCCGTAGTCAGAGGTGAAATTCTTGGATTTGCGGAAGACTCACAACTGCGAAAGCATTTACCAGGGATGTTTTCATTAATCAAGAACGAAAGTTTAGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Rhizosolenia",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149069",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia setigera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149115",
"accession": "AB430589.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia pungens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149117",
"accession": "JQ315683.1.1260_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia setigera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149115",
"accession": "JQ315685.1.1265_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149116",
"accession": "AJ535178.1.1801_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Rhizosolenia setigera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149115",
"accession": "AY485508.1.1721_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|